Package: Wavelength 2.4.1

Aaron Chafetz

Wavelength: Wavelength

USAID OHA Office. Munging of mission weekly HFR data.

Authors:Aaron Chafetz [aut, cre], Baboyma Kagniniwa [aut]

Wavelength_2.4.1.tar.gz
Wavelength_2.4.1.zip(r-4.7)Wavelength_2.4.1.zip(r-4.6)Wavelength_2.4.1.zip(r-4.5)
Wavelength_2.4.1.tgz(r-4.6-any)Wavelength_2.4.1.tgz(r-4.5-any)
Wavelength_2.4.1.tar.gz(r-4.7-any)Wavelength_2.4.1.tar.gz(r-4.6-any)
Wavelength_2.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Wavelength/json (API)
NEWS

# Install 'Wavelength' in R:
install.packages('Wavelength', repos = c('https://usaid-oha-si.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/usaid-oha-si/wavelength/issues

Datasets:

On CRAN:

Conda:

3.41 score 3 stars 57 scripts 83 exports 35 dependencies

Last updated from:270e88233a. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING125
source / vignettesOK200
linux-release-x86_64WARNING127
macos-release-arm64WARNING84
macos-oldrel-arm64WARNING86
windows-develWARNING75
windows-releaseWARNING75
windows-oldrelWARNING74
wasm-releaseOK119

Exports:%>%apply_filetimestampcheck_contentconfirm_validationscurr_fyddcpv_checkdownload_newextract_iso3codeextract_mechcodegen_urlget_datim_dataget_datim_targetsget_operatingunitguess_operatingunithfr_aggrhfr_append_sourceshfr_assign_pdshfr_exporthfr_extract_metahfr_filter_pdhfr_fix_datehfr_fix_noncompliancehfr_gap_targethfr_gatherhfr_group_wklyhfr_gs_statrephfr_identify_freqhfr_identify_pdshfr_importhfr_munge_stringhfr_orgunit_searchhfr_process_templatehfr_readhfr_read_allhfr_rectify_datehfr_restrict_colshfr_round_datehierarchy_cleanhierarchy_extracthierarchy_identify_ctryhierarchy_renameidentify_levelsidentify_newfilesidentify_ouuidsis_date_validis_hfrtabis_mech_validis_mech4ouis_metatabis_orgunituid_validis_orgunituid4ouis_ou_validload_lookupsmatch_ignoredfilespackage_checkpaint_bluepaint_greenpaint_redpaint_yellowparse_submissionpull_hierarchypull_mechpull_merreport_submissions_errorsrevert_validationsstash_outgoingtidy_sitelistupdate_meta_mechsupdate_meta_merupdate_meta_orgsupdate_meta_targetsupdate_operatingunitsupload_meta_tablevalidate_datevalidate_hfr_datavalidate_importvalidate_initialvalidate_mechanismvalidate_orgunitvalidate_outputvalidate_submissionvalidate_submissionsvar_exists

Dependencies:bitbit64cellrangerclicliprcpp11crayondplyrgenericsgluehmslifecyclelubridatemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrreadxlrematchrlangstringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Apply Time Stamp to file andapply_filetimestamp
Validate output contentcheck_content
Validate datescheck_dates
Validate disaggs for exportcheck_disaggs
Check OUs listed in operatingunitcheck_distinct_ous
Validate indicators for exportcheck_inds
Validate mechanisms for exportcheck_mechs
Validate orgunituids for exportcheck_orgunituids
Validate columns for exportcheck_output_cols
Checks template's columnscheck_template_cols
Confirm validations of processed filesconfirm_validations
Count missing valuescount_missing
Current Fiscal Yearcurr_fy
DDC Pre-Validation Checkddcpv_check
Download New Submission to uploaddownload_new
Extract OU ISO3 codeextract_iso3code
Extract mechanism codeextract_mechcode
Flag Extra Variablesflag_extra
Flag Missing Variablesflag_missing
Generate a API URLgen_url
DATIM API Call for Targetsget_datim_data
DATIM API Call for Targetsget_datim_targets
Get operating unit nameget_operatingunit
Get operating unit nameguess_operatingunit
Aggregate HFR dataframehfr_aggr
#' Append HFR and DATIM Datahfr_append_sources
Add HFR Period columnhfr_assign_pds
Export High Frequency Datahfr_export
Export csv files by mechanismhfr_export_mech
Extract Meta Data Information about Templatehfr_extract_meta
Filter to Select HFR Periodhfr_filter_pd
Convert dates to date formathfr_fix_date
Resolve issues with non-standard entrieshfr_fix_noncompliance
Generate Gap Targetshfr_gap_target
Reshape HFR Data frame longhfr_gather
Create Monthly Aggregate for Weekly datahfr_group_wkly
DDC Status Report Google Sheet IDhfr_gs_statrep
Identify reporting frequencyhfr_identify_freq
Create a data frame of HFR weeks and periodshfr_identify_pds
Import template sheet(s)hfr_import
Standardized Texthfr_munge_string
Search Org Hierarchy for Org Unithfr_orgunit_search
Import and Munge HFR Standard Templateshfr_process_template
Read in HFR output filehfr_read
Batch read hfr fileshfr_read_all
Rectify Incorrectly Submitted Dateshfr_rectify_date
Restrict HFR data frame columnshfr_restrict_cols
Round Date Valueshfr_round_date
Clean up DATIM Hierarchy Pathhierarchy_clean
Pull Hierarchy Data from DATIMhierarchy_extract
Extract country name from OU or country namehierarchy_identify_ctry
Rename Hierarchy from Levels to OU/SNU1/PSNU/Facilityhierarchy_rename
Identify Facility/Community levels in org hierarchyidentify_levels
Identify New Submissions on Google Driveidentify_newfiles
Pull OU UIDSidentify_ouuids
Validate reporting datesis_date_valid
Determine if there are tabs to importis_hfrtab
Validate mechanism codeis_mech_valid
Validate mechanism codeis_mech4ou
Determine whether meta tab existsis_metatab
Check if Operating Unit name is validis_orgunituid_valid
Check if orgunituid exist in operating unitis_orgunituid4ou
Check if OperatingUnit is validis_ou_valid
ISO Code Mapping Tableiso_map
Load DATIM Look up tablesload_lookups
Identify S3 file names matching Ignored filesmatch_ignoredfiles
OPM Holidayopm_holiday
Check if package existspackage_check
Paint console text in bluepaint_blue
Paint console text in greenpaint_green
Paint console text in redpaint_red
Paint console text in yellowpaint_yellow
Parse out submitted file componentsparse_submission
Compile PEPFAR Hierarchypull_hierarchy
Pull Partner/Mechanism Info from DATIMpull_mech
Extract DATIM Results and Targets (DATIM API Call)pull_mer
Report files validationreport_submissions_errors
Revert validated file to processed filesrevert_validations
Download from S3 and push to Google Drivestash_outgoing
Column Headers for HFR Long Templatetemplate_cols_long
Column Headers for HFR Indicator Meta Datatemplate_cols_meta
Column Headers for HFR Wide Templatetemplate_cols_wide
Column Headers for HFR Wide - Limited Templatetemplate_cols_wide_lim
Import and munge submitted site listtidy_sitelist
Update USAID Mechanism meta tableupdate_meta_mechs
Update MER meta tableupdate_meta_mer
Update Organization Hierarchy meta tableupdate_meta_orgs
Update MER targets from MSD (prior to site results being available)update_meta_targets
Update invalid operating unitsupdate_operatingunits
Push meta tables to Google Drive and s3upload_meta_table
Validate HFR PD Datevalidate_date
Validate processed hfr datavalidate_hfr_data
Validation on importvalidate_import
Initial Validation on Submitted templatevalidate_initial
Validate mechanism codevalidate_mechanism
Validate org unit uidvalidate_orgunit
Validation Checksvalidate_output
Validate submitted filesvalidate_submission
Validate filesvalidate_submissions
Check if variable existvar_exists